MedVisBonn / eyepy

A python package to read, analyse and visualize OCT and fundus data from various sources.

Home Page:https://medvisbonn.github.io/eyepy/

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[Bug] Bscans and segmentation displayed incorrectly

drombas opened this issue · comments

  • eyepy version: 0.7.0
  • Python version: 3.8.10
  • Operating System: Linux-5.10.147+-x86_64-with-glibc2.29

Description

Hi there. I am testing the package a bit to get an idea of how it works.
When plotting B-scans with segmentation overlay the boundaries do not match.
It seems that what happens is that segmentation and B-scans are stored with different orders.

What I Did

image

Thank you very much for reporting this. You did everything right. For v0.7.0 I changed some internal indexing which is not reflected in the plotting yet. There is going to be a new version with several fixes including this one in about one hour :)

I just created a new release. I think it should work now as expected. Otherwise, let me know. Also if you have any questions or suggestions with regard to the package in general I am happy to explain and use it as a pointer on where to optimize the documentation first :)

Brilliant, it works now! I will play with it for a while and let you know any suggestions/questions.