maxulysse

nf-core_sarek

Main repo:

nf-references

jebifreprohackathon

maxulysse

My own GitHub Profile README

nf-core_configs

Main repo:

nf-core_modules

Main repo:

nf-core_rnavar

Main repo:

nextflow

A DSL for data-driven computational pipelines

nextflow-website

Nextflow public web site

nf-core_bamtofastq

Converts bam or cram files to fastq format and does quality control.

nf-core_chipseq

main repo: https://github.com/nf-core/chipseq

nf-core_createpanelrefs

Generate Panel of Normals, models or other similar references from lots of samples

nf-core_demultiplex

Demultiplexing pipeline for sequencing data

nf-core_fetchngs

Pipeline to fetch metadata and raw FastQ files from public and private databases

nf-core_imcyto

main repo: https://github.com/nf-core/imcyto

nf-core_mag

main repo: https://github.com/nf-core/mag

nf-core_methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

nf-core_references

nf-core_riboseq

Pipeline for the analysis of ribosome profiling, or Ribo-Seq (also named ribosome footprinting) data.

nf-core_rnadnavar

main repo: https://github.com/nf-core/rnadnavar

nf-core_rnaseq

Main repo:

nf-core_scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

nf-core_tools

Main repo:

nf-core_variantannotation

nf-core_viralrecon

Main repo:

nf-core_website

Main repo:

nf-training-intro

object_object_error

seqera-kit

Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)

seqeralabs_nf-aggregate

main repo: https://github.com/seqeralabs/nf-aggregate