Matt London's repositories
bio--reference-genome-assembly
Guide for creation of reference genomes in Linux with dDocent and the Stacks package.
fine-tune--flan-t5-small-samsum
Pipeline to fine-tune google/flan-t5-small language model on the samsum dataset (messenger-like conversations with summaries)
obj-detect--flask
Object Recognition Web App
chatbot-pdf
Chat with your PDF and generate a transcript of the conversation.
deepchain-apps
A library for deploying App on deepchain.bio
genome-grouping--nlp
Using alignment hit table of COVID-19 genome subtypes for class clustering with K-Means, Sillhoutte Analysis and Principal Component Analysis (PCA).
nlp--literature-clustering
Demonstration for processing XML of COVID-19 research and visualizing with Bokeh.
obj-detect--image-ai--driving
Code and instructions for computer vison object detection in live video.
Predict-Loan-Default-Directory
Use XGBoost to predict loan default, based on multivariate data.
roboflow-notebooks
Examples and tutorials on using SOTA computer vision models and techniques. Learn everything from old-school ResNet, through YOLO and object-detection transformers like DETR, to the latest models like Grounding DINO and SAM.
segment-semantic--unet
Pipeline for U-Net image segmentation in Keras with Tensorflow backend.
semantic-segmentation-pytorch
Pytorch implementation for Semantic Segmentation/Scene Parsing on MIT ADE20K dataset
tensorflow-lite-android-app
Camera app that continuously detects the objects (bounding boxes and classes) in the frames seen by your device's back camera.
nlp--pdf-parser--LDA
Extract form input from PDFs and group keywords into subtopics with Latent Dirichlet Allocation (LDA).
nlp--word-tally--web-scrape
Web application that displays frequencies of English token words.
wine-clerk
Chrome extension that updates raw winebid.com bid prices into total cost including delivery, house cut, etc.
z-bio--coverage-mapper-v3
Python code to generate genome reference coverage counts for forward and reverse reads.
z-bio--genome-barcode-reverser
Command line application to get reverse barcodes and their frequencies in genome sequences.