Could you please tell me how to "inversion.txt" in the 1_QC_GWAS folder

Question

Could you please tell me how to "inversion.txt" in the 1_QC_GWAS folder

8865225 opened this issue 3 years ago · comments

I want to practice my genetic data following your tutorial, but I do not know how to create the mydata-based inversion.txt file. Could you please tell me in detail. Thank you very much.

Andries Marees · Answer 1 · Tue Feb 23 2021 23:29:43 GMT+0800 (China Standard Time)

This file is not specific to the tutorial data. In essence, it's a simple text file indicating certain regions for exclusion (e.g., the HLA region; high LD regions), based on the literature.

So, feel free to use this file, or update it based on the literature, since our file might be outdated by now.

S_RAHMAN · Answer 2 · Tue Feb 08 2022 21:25:33 GMT+0800 (China Standard Time)

I am trying to make sense of this recently. Are regions provided in the tutorial based on the hg19 build?