Maastricht University IDS

semanticscience

The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

jupyterlab

🪐 JupyterLab + VisualStudio Code workspaces for data science and knowledge graphs

dsri-documentation

📖 Documentation for the Data Science Research Infrastructure at Maastricht University

federatedQueryKG

This repository is a workplace for COST Action Hackathon event on Federated Query over Knowledge Graphs which will happen on 25-27 April in Izmir Turkey.

translator-openpredict

🔮🐍 A package to help serve predictions of biomedical concepts associations as Translator Reasoner API

perfect-graph

Create perfect graph visualisations easily

UM_KEN4256_KnowledgeGraphs

Resources for the KG course at IDS, Maastricht University

dsri-helm-charts

Helm charts for the Data Science Research Infrastructure at Maastricht University

fair-test

☑️ A library to build and deploy FAIR metrics tests APIs that can be used by FAIR evaluation services supporting the FAIRMetrics specifications, such as FAIR enough and the FAIR evaluator.

knowledge-collaboratory

🔬 Website to help browse and publish Nanopublications

cookiecutter-python-package

🍪🐍 A cookiecutter package to bootstrap python packages

fair-enough

♻️ Service to define and run evaluations of the FAIR principles (Findable, Accessible, Interoperable, Reusable) on online resources

food-claims-kg

🧅 RDF knowledge graph for food health claims

PhDThesis

This repository is for sharing PhD thesis managing and writing. Our focus group is UM (FSE/DACS/IDS) PhD students.

predict-drug-target

Using ESM2 protein embeddings and MolecularTransformer drug embeddings to train a linear classifier to predict potential drug-targets interactions

semanticscience-website

Website for the Semanticscience Integrated Ontology (SIO)

LMKBC-2023

cohort-explorer

🫀 Webapp to explore cohorts metadata for the iCARE4CVD project

LUCE

🧊 LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance.

MedicalLLM

This repository is for collecting and updating existing and upcoming LLM tools and papers focusing on healthcare and medicine domain.

DecentralizedHealthcareBackend

global-studies

Materials for Global Studies Bachelor Program

cookiecutter-trapi-predict-kit

🍪🔮 A cookiecutter template to bootstrap machine learning prediction experiments, and integrate the predictions to a Translator Reasoner API

CVDPrediction

This repository is created for sharing the code and knowledge in building CVD (Cardiovascular Disease) risk prediction for CML (Chronic myelogenous leukemia) patients, requesting and using MIMIC data, and building a digital consent tool based on our previous work - Citizen-centric personal data platform (TIDAL).

extract-dailymed-spl

💊 Extraction of DailyMed Structured Product Labeling

FedQuery2024

MIRACLE

💫 Drug Indication Annotation with Prodigy

translator-deep-purpose

🤿 Integrating the Deep Purpose models to the Biomedical Data Translator ecosystem

trapi-predict-kit

🧰 A package to help create and deploy Translator Reasoner APIs (TRAPI) from any prediction model exposed as a regular python function.

ucum-fhir-openrefine-extension

This repository is an OpenRefine extension that adds some of the functionality provided by the UCUM-Java library as GREL functions.