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MIC-DKFZ / medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

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Retina U-Net does not work in the toy experiment

skief opened this issue · comments

commented

When I try to use the Retina U-Net in the toy experiment(just changed self.model = 'retina_unet' and the path to the data) the program crashes in line 447 of the retina_unet.py due to the var_seg[:, 0] containing the values [0, 1, 2] while the size of the seg_logits is just [20, 2, 320, 320] and not [20, 3, 320, 320]

commented

Hi skief,
thanks for your input.
Fixed in this commit.