MIC-DKFZ / HD-BET


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Downloading https://zenodo.org/record/2540695/files/0.model?download=1 ...
Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 1318, in do_open
    encode_chunked=req.has_header('Transfer-encoding'))
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 1239, in request
    self._send_request(method, url, body, headers, encode_chunked)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 1285, in _send_request
    self.endheaders(body, encode_chunked=encode_chunked)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 1234, in endheaders
    self._send_output(message_body, encode_chunked=encode_chunked)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 1026, in _send_output
    self.send(msg)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 964, in send
    self.connect()
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/http/client.py", line 1400, in connect
    server_hostname=server_hostname)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/ssl.py", line 407, in wrap_socket
    _context=self, _session=session)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/ssl.py", line 814, in __init__
    self.do_handshake()
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/ssl.py", line 1068, in do_handshake
    self._sslobj.do_handshake()
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/ssl.py", line 689, in do_handshake
    self._sslobj.do_handshake()
ssl.SSLError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:841)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.6/bin/hd-bet", line 6, in <module>
    exec(compile(open(__file__).read(), __file__, 'exec'))
  File "/Users/work/HD-BET/HD_BET/hd-bet", line 119, in <module>
    run_hd_bet(input_files, output_files, mode, config_file, device, pp, tta, save_mask, overwrite_existing)
  File "/Users/work/HD-BET/HD_BET/run.py", line 42, in run_hd_bet
    maybe_download_parameters(0)
  File "/Users/work/HD-BET/HD_BET/utils.py", line 35, in maybe_download_parameters
    data = urlopen(url).read()
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 223, in urlopen
    return opener.open(url, data, timeout)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 526, in open
    response = self._open(req, data)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 544, in _open
    '_open', req)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 504, in _call_chain
    result = func(*args)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 1361, in https_open
    context=self._context, check_hostname=self._check_hostname)
  File "/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/urllib/request.py", line 1320, in do_open
    raise URLError(err)
urllib.error.URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:841)>

I downloaded the 5 models manually now, where do I put those files and skip the error message?
Where do you put the model

have a look here:

HD-BET/HD_BET/paths.py

Line 4 in d517276

    
           folder_with_parameter_files = os.path.join(os.path.expanduser('~'), 'hd-bet_params')

You can follow the download code in utils.py to see how the parameters should be saved

Error on Model download