Luyang-Hong's starred repositories

jupyter

Jupyter metapackage for installation, docs and chat

Language:PythonLicense:BSD-3-ClauseStargazers:14697Issues:635Issues:399

RISE

RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension

Language:JavaScriptLicense:NOASSERTIONStargazers:3642Issues:84Issues:449

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Language:PythonLicense:Apache-2.0Stargazers:872Issues:34Issues:137

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

Language:C++License:GPL-3.0Stargazers:550Issues:36Issues:324

metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

Language:ShellLicense:MITStargazers:362Issues:17Issues:526

picrust2

Code, unit tests, and tutorials for running PICRUSt2

Language:PythonLicense:GPL-3.0Stargazers:291Issues:24Issues:303

microeco

An R package for data analysis in microbial community ecology

Language:RLicense:GPL-3.0Stargazers:163Issues:4Issues:305

too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Language:HaskellLicense:GPL-3.0Stargazers:99Issues:3Issues:51

Maaslin2

MaAsLin2: Microbiome Multivariate Association with Linear Models

Language:RLicense:NOASSERTIONStargazers:96Issues:8Issues:20

ANCOMBC

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

License:NOASSERTIONStargazers:51Issues:0Issues:0

MetaMapR

Network mapping tool for metabolomics + data.

Language:HTMLLicense:NOASSERTIONStargazers:46Issues:16Issues:7

Rhea

A set of R scripts for the analysis of microbial profiles

Language:RLicense:MITStargazers:38Issues:0Issues:0

metamicrobiomeR

An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models

Language:HTMLStargazers:33Issues:0Issues:22
Language:RStargazers:29Issues:0Issues:0

ZIBR

Zero-Inflated Beta Random Effect model

Language:RLicense:NOASSERTIONStargazers:29Issues:5Issues:15

MIMOSA

Model-based Integration of Metabolite Observations and Species Abundances

Language:RStargazers:22Issues:0Issues:0

Galaxy-M

Metabolomics Tools for Galaxy

Language:HTMLLicense:GPL-2.0Stargazers:19Issues:10Issues:0

metabolomics

Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016

License:GPL-3.0Stargazers:11Issues:0Issues:0

MKmisc

R package MKmisc

santaR

Interactive package for Short AsyNchronous Time-series Analysis (SANTA) in R, implemented in Shiny

Language:RLicense:GPL-3.0Stargazers:10Issues:0Issues:0

ggordiplots

Make ggplot Versions of Vegan's Ordiplots

Language:RLicense:GPL-2.0Stargazers:5Issues:3Issues:15

FICO-Explainable-ML-Challenge-HELOC-Dataset

Course work of "STAT3612 Statistical Machine Learning" that uses the same dataset HELOC as the FICO Explainable Machine Learning Challenge.

Language:HTMLStargazers:2Issues:0Issues:0

Marketing-Analysis-for-Launching-A-New-Restaurant

Course project of "STAT3613 Marketing Engineering" that performed an exploratory market research of launching an off-campus restaurant using R

Language:RStargazers:2Issues:0Issues:0
Language:RStargazers:1Issues:0Issues:0

DS2000-Project-1-Bonjour-and-Buenos-Dias

Course work of "DS2000 Programming with Data" applied a supervised machine learning method which create a tool to predict what language a document is written in given a sample set of known documents.

Language:PythonStargazers:1Issues:0Issues:0

DS2000-Project-2-Stock-Market-Data-Analysis-and-Visualisation

Course work of "DS2000 Programming with Data" that builds a single-index model for stocks price changes to evaluate the stocks' risk.

Language:Jupyter NotebookStargazers:1Issues:0Issues:0

FINA-4350-Predicting-Soybean-Spot-Price-Change-with-Trade-War-Related-Tweets

Term Project Instructor: Dr. Matthias Buehlmaier Group: YayNLP

Language:HTMLStargazers:1Issues:0Issues:0

Time-Series-Analysis-on-Monthly-Milk-Production-Pounds-per-Cow

Course project of "STAT4601 Time Series Analysis" that analysed the monthly milk production pattern using R

Language:HTMLStargazers:1Issues:0Issues:0