KRiedmiller

docker-obsidian

GelGenie

Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available.

atomistic-cookbook

A cookbook wtih recipes for atomic-scale modeling of materials and molecules

pyautogui

A cross-platform GUI automation Python module for human beings. Used to programmatically control the mouse & keyboard.

hello-algo

《Hello 算法》：动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C++, C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新，English version ongoing

grappa

A Machine Learned Molecular Mechanics Force Field with integration into GROMACS and OpenMM

LazyVim

Neovim config for the lazy

gotosocial

Fast, fun, small ActivityPub server.

GPR-HAT-barrier-prediction

Code used to predict hydrogen atom transfer (HAT) energy barriers using Gaussian Process Regression

kimmdy

Reactive MD pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)

gemnet_pytorch

GemNet model in PyTorch, as proposed in "GemNet: Universal Directional Graph Neural Networks for Molecules" (NeurIPS 2021)

worm-sim

Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around.

memories

Fast, modern and advanced photo management suite. Runs as a Nextcloud app.

awesome-privacy

Awesome Privacy - A curated list of services and alternatives that respect your privacy because PRIVACY MATTERS.

jan

Jan is an open source alternative to ChatGPT that runs 100% offline on your computer. Multiple engine support (llama.cpp, TensorRT-LLM)

validate-grappa

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

shtab

↔️ Automagic shell tab completion for Python CLI applications

kimmdy-HAT-fixed-rate

KIMMDY HAT reaction plugin with fixed rate

viamd

Visual Interactive Analysis of Molecular Dynamics

crazydoc

Read DNA sequences from colourful Microsoft Word documents

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

polyply_1.0

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

entr

Run arbitrary commands when files change

tabspace

✍️ A scratchspace for your new Tab page

input-leap

Open-source KVM software

zotero-better-bibtex

Make Zotero effective for us LaTeX holdouts

parse2docs

Generate usage documentation in Markdown format from Python scripts using argparse