JoseBlanca / vcf2fasta

Create sample sequences from a reference genome and a VCF file

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TemporaryDirectory error in vcf2fasta

bauchetg opened this issue · comments

Hello @JoseBlanca !
I get an issue with: ImportError: cannot import name TemporaryDirectory
coming from from the definition of tempfile import NamedTemporaryFile, TemporaryDirectory
I am using python 2.7.9.

Or perhaps my syntax is incorrect I use:
python vcf2fasta.py refgenome.fasta markers.vcf region_sample.bed

Any suggestion?