JonnyTran

OpenOmics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

microRNA-Lung-Cancer-Associations

An association study to identify a robust miRNA biomarker signature at various stages of lung cancer.

MultiOmicsGraphEmbedding

A PyTorch-based package for representation learning on heterogeneous networks. It aims to facilitate experimentation on different GNN models, metrics, and datasets from PytorchGeometric, DGL, networkx.

nuclei-segmentation

Getting my hand dirty on nuclei detection and segmentation algorithms on Whole-Slide Pathology Images

bash-handbook

:book: For those who wanna learn Bash

LATTE

Layer-stacked Attention for Heterogeneous Graph Embedding

LATTE2GO

Protein function prediction by incorporating knowledge graph representation of heterogeneous interactions and Gene Ontology

BICCN_MOp_miniatlas

https://www.nature.com/articles/s41586-021-03500-8#Sec4

cache

Cache dependencies and build outputs in GitHub Actions

dask-labextension

JupyterLab extension for Dask

dawn-teach-math

DeepGraphGO

DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

dgl-ke

High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

fastapi-vercel

GitHubGraduation-2021

Join the GitHub Graduation Yearbook and "walk the stage" on June 5.

Jonny.bio

JonnyTran

jonnytran.github.io

Nhat (Jonny) Tran's academic personal websites

Mobi_signup

OGB-LSC2

Docker set up for the OGB Large Scale Challenge with graph neural networks

OpenNE

An Open-Source Package for Network Embedding (NE)

pyopensci.github.io

This is the website for pyOpenSci. Contributions welcome!!

RDATKit

RNA Data (RDAT) read/write scripts

rna2rna_supp_materials

Supplementary materials for PSB submission

siamese-triplet

Siamese and triplet networks with online pair/triplet mining in PyTorch

starter-hugo-research-group

swingfire.github.io

Lindy Camping!

vue-pdf-highlighter

vue-pdfjs-viewer

Vue wrapper components for the pdfjs library