JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.

Home Page:https://doubletdetection.readthedocs.io/en/stable/

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Mini viz suite

adamgayoso opened this issue · comments

The user should have easy access to basic viz:

  • Convergence plot showing number of called doublets over iterations, for diagnostic purposes.
    This plot could allow the user to try different voter and p-value thresholds.

  • Breakdown of synthetic doublets and original cells on any particular iteration, per cluster, with corresponding p-values for that iteration

  • tsne with called doublets in black?