JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.

Home Page:https://doubletdetection.readthedocs.io/en/stable/

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Improve never clustered warning message

JonathanShor opened this issue · comments

doubletdetection.py:142: RuntimeWarning: One or more cells failed to join a cluster across all runs.
Should at least state specifically how many cells.

Since #63, .labels would be a np.nan for all cells that failed to join a cluster across all runs in the case that n_iters > 1.
Since #81, this warning has not been issued.

Need to verify the behavior when n_iters == 1, but otherwise I think we should close this.