JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.

Home Page:https://doubletdetection.readthedocs.io/en/stable/

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organize file structure and decide how we want to run the final program

adamgayoso opened this issue · comments

this is ongoing. No action necessary right now

would like to comment that it appears we can take dataAcq and normalize counts and just put them in doublet detection. Makes sense to me to leave synthetic.py as is

I could update test_run.py to take command line args for at a minimum the data file path.

What else should be user set-able?

I could update test_run.py to take command line args for at a minimum the data file path.

Initial at least done in #19.

This should be done by Monday.

At least everything in master should be clean by Monday (or the following Monday, really).
Prolly stop committing to master then too.