List of barcode duplets

[ibseq]

hello, is there a way once we've ran dupeltdetection to have a list of these barcodes rather than only the umap plot?

thanks
ibseq

[Adam Gayoso]

As stated on the readme, you can run

labels = clf.fit(raw_counts).predict() and labels is 1 if there is a doublet and 0 if not. np.nan are ambiguous cells. Labels will be in the same order as the cells in raw_counts, so you should be able to link labels to your barcodes.