JonathanShor / DoubletDetection

Doublet detection in single-cell RNA-seq data.

Home Page:https://doubletdetection.readthedocs.io/en/stable/

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Removing default thresholds

adamgayoso opened this issue · comments

This shouldn't be an optional parameter. Experimenters should create the threshold plot and choose their own thresholds.

Alternatively, we can leave default thresholds, but print a mean statement about exploring the threshold space.

I'm not sure we should do this any longer.

Not even the mean statement?