Jesse-Islam's repositories
basicGameInGadot
makes a basic game in godot following tutorial: https://www.youtube.com/watch?v=Mc13Z2gboEk
HeartBeastArpgTutorialGodot
All the code needed to follow and develop the game by heartbeast following this tutorial series: https://www.youtube.com/watch?v=mAbG8Oi-SvQ
UseR--CaseBase-Presentation
R-code to generate slides for the R presentation
basicGodotGame
creates a simple game in godot enginer following this tutorial series https://www.youtube.com/watch?v=Mc13Z2gboEk
basicNeuralNetworkPackage
Implementing a basic neural network from scratch, by translating a tutorial from Javier Ideami on Medium. https://towardsdatascience.com/coding-a-2-layer-neural-network-from-scratch-in-python-4dd022d19fd2
cbnn
R package for case-base neural networks:
cbnnManuscript
Code required for simulations, casestudies, and paper that generates CBNN manuscript
cbpaper
Source code for Casebase paper
clustalSORT
Sorts the output of clustal given strings starting with xx- or x-
genpipesExtension
I extended genpipes by creating a script to work with the output folder structure. We get a few transcript and gene expression counts which we can use for analysis. uses txImporter, featurecounts and stringtie's prepDE.py
godotPlayGround
A bunch of small godot projects
GTFMerge
merges two GTF reference genomes
Jesse-Islam.github.io
Personal Website
Ligated-Plasmid-Checker-for-Inserts
Made to take information from nanuq, and takes well positions, sequence name and the inserts
neuralNetworkPlayground
A repository to try out all the new fancy techniques I come across.
Rdatasets-bioconductor
A collection of datasets originally distributed in bioconductor packages
riskRegression
R package for risk regression and prediction with censored data
RNAseq-QC-tools-genpipes
a set of functions to streamline the analysis of RNAseq using deseq2. We base the code here off of the output of genpipes
RnaseqQCGenpipes
set of tools to unify the output of genpipes, and extend its functionality to include quality control assessments
rpkg
Sahir's R package creation tutorial
SimulateSurvival
A bunch of code to simulate survival data
statisticalRethinking
Examples I work through in the statistical rethinking textbook
survivalMLPUsingcasebase-AI-Genomics
This repository was created for the WINTER 2020 AI-genomics course given by district 3. the purpose of this project is to create a novel approach to survival analysis using casebase sampling. Casebase sampling reformulates how survival analysis is done, making existing methods like logistic regression feasible in a survival setting.
SurvivalScraper
scrapes taskview links