Locating the inf dir

[sylestiel]

Hi,

Could you provide some guidance on how to specify the location of the influence dir for the function
import_seurat_scANANSE()?
This is the layout of my anansnake folder:

Thanks!

[Jos Smits]

Hi Sylestiel,

Thanks for your patience, i was on holiday.
You can specify where the influence folder appears via:
config_scANANSE(output_dir ='location_of_a_folder')
After you run anansnake the influence directory should subsequently be:
'location_of_a_folder/influence'
What this function does under the hood is specifying the location of the anansnake output.
In the anansnake config file (result_dir: location_of_a_folder)
After running anansnake the influence files should be present in this folder (which are subsequently loaded by the import function).

Greetings

JGA Smits