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InsightSoftwareConsortium / GetYourBrainTogether

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

Home Page:https://insightsoftwareconsortium.github.io/GetYourBrainTogether/

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Update MetadataPreservation

dzenanz opened this issue · comments

commented
  • Update requirements.txt to use ITK 5.3 RC4, once it is tagged and wheels are available.
  • link to slicer.org/wiki/Coordinate_systems and take 1 or 2 images from it and add to orient notebook
  • exercise based on reorient all images into consistent orientation cell (add anatomical orientation label, let them choose the axis code)
  • do super-sampling exercise (only a few missing lines)
  • link to c++ example (just print spatial metadata)
  • local installation instructions
commented

image.spacing == image['spacing']
pip install --pre --upgrade itk
ITK_COORDINATE_ORIENTATION_LPS -> LPI
link to https://www.slicer.org/wiki/Coordinate_systems and take 1 or 2 images from it and add to orient notebook

exercise based on reorient all images into consistent orientation cell (add anatomical orientation label, let them choose the axis code)
do super-sampling exercise (only a few missing lines)

link to c++ example (just print spatial metadata)

remove link to fMost meterials

bus schedule -> KWSdiscourse

local installation instructions

commented

image.spacing produces an AttributeError: 'itkImageSS3' object has no attribute 'spacing'.
bus every 15 minutes
Some things done in ea68db4.

Outstanding TODOs added to issue description.