Giters

InsightSoftwareConsortium / GetYourBrainTogether

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

Home Page:https://insightsoftwareconsortium.github.io/GetYourBrainTogether/

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Add description for metadata preservation tutorial

thewtex opened this issue · comments

commented

Interactive content todos:

  1. Jupyter notebook on reading an image, accessing metadata, in C++, itk::ReadImage, ->Print(), GetSpacing, GetImportBuffer, etc. [Plain C++ example added via 2eb3950]
  2. Jupyter notebook on how to read the image with ITK Python, describe the metadata, how it is accessed, LPS orientation, the spatial image metadata concepts from the ITK Software Guide [Added via ad8cdb1 and 3f97840 in #23]
  3. Notebook on how to use the orient filter in Python [Added via a0d9090 in #23]
  4. Jupyter notebook on reading the image with nibabel, anatomical orientation, spatial metadata, converting between nibabel and itk
  5. Jupyter notebook on converting between ITK LPS linear transform and Slicer RAS linear transform based on this documentation h/t @jcfr
commented

Notebook on how to use the orient filter in Python

@thewtex this requires building from source, as the feature was added after 5.3RC3.

commented

after 5.3RC3.

We can tag / release 5.3RC4 for the hackathon.