InsightSoftwareConsortium / GetYourBrainTogether

Get Your Brain Together Neuroimage Registration Workshops and Hackathons

Home Page:https://insightsoftwareconsortium.github.io/GetYourBrainTogether/

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Create tutorial about the data

lydiang opened this issue · comments

Create a "do at your own pace" tutorial (a collection of jupyter notebooks)

  • Introduction of the Allen CCFv3 using ITK and related tools to open and visualize the image volume - includes some background principles of biomedical imaging data
  • Introduction to ITK registration framework and show examples of transform and resampling, rigid, affine, deformable
  • Demonstrate the use of ANTs (on STPT - simply problem) to register one example dataset and how to use the transform output to resample the image and to transform annotation to/fro between the spaces
  • Introduction of the fMOST dataset using ITK and related tools to open/visualize. Point out the specific properties/challenges of this dataset

Infrastructure to run these notebooks such as Binder, or BIL hosting