Error when trying to create a new Dataset (NullPointerException)
faborg opened this issue · comments
When I try to create a new Dataset, after clicking on "Save Dataset" the form is grayed out and no data is saved. Is this a bug? Help would be highly appreciated.
The payara-log contains the following exception:
[2024-05-13T13:25:57.553+0000] [Payara 6.2024.4] [SEVERE] [] [jakarta.enterprise.resource.webcontainer.faces.context] [tid: _ThreadID=71 _ThreadName=http-thread-pool::http-listener-1(4)] [timeMillis: 1715606757553] [levelValue: 1000] [[
java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
at edu.harvard.iq.dataverse.DatasetPage.returnToDraftVersion(DatasetPage.java:4070)
at edu.harvard.iq.dataverse.DatasetPage.save(DatasetPage.java:3920)
at jdk.internal.reflect.GeneratedMethodAccessor1425.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.expressly.util.ReflectionUtil.invokeMethod(ReflectionUtil.java:186)
at org.glassfish.expressly.parser.AstValue.invoke(AstValue.java:253)
at org.glassfish.expressly.MethodExpressionImpl.invoke(MethodExpressionImpl.java:248)
at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:70)
at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:74)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:62)
at jakarta.faces.component.UICommand.broadcast(UICommand.java:205)
at jakarta.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:858)
at jakarta.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1332)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:56)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:72)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:159)
at jakarta.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:691)
at jakarta.faces.webapp.FacesServlet.service(FacesServlet.java:449)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:83)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
]]
I have installed:
- Dataverse 6.2
- Payara 6.2024.4
- openjdk 17.0.11 2024-04-16
- OpenJDK Runtime Environment (build 17.0.11+9-Debian-1deb12u1)
- OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1deb12u1, mixed mode, sharing)
java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null at edu.harvard.iq.dataverse.DatasetPage.returnToDraftVersion(DatasetPage.java:4070)
Yes, sure enough, getGlobalId must be null:
@faborg thanks for the details about your installation. Is it a new installation? Did you upgrade from Dataverse 6.1? Which PID provider are you using (out of the box, DataCite is selected).
We definitely haven't seen this in 6.2 yet. The only thing different in your setup is a later Payara - the Guides talk about 6.2023.8 and I've run 6.2023.11 without issue. Any details to help us reproduce this would be very welcome.
It's a fresh install (locally in VMs) and I'm using a FAKE DOI Provider.
Is your FAKE provider configured with the new multi-pid-provider JVM/micro-profile options or the original/legacy single-pid-provider database settings?
How do we switch between multi and single? I encountered the same issue when trying to save dataset right after traditional installation following the guide?
I think new installs by default should be using the settings described in https://guides.dataverse.org/en/latest/installation/config.html#dataverse-pid-type. If you can see those when you do a bin/asadmin list-jvm-options from your /usr/local/payara6 dir, you should be using the new multi-pid way. If you have http://localhost:8080/api/admin/settings/ :DoiProvider and related things set, you have the legacy settings. Those shouldn't be needed and should be ignored if you have the multi-pid setup in place (although they would be used if the multi-pid settings are invalid - do you see anything in the log about legacy settings when you start up?)
I'm asking so I know how to try and reproduce your issue - the code for new and legacy settings are different so it's possible we have a problem with one and not the other. We could also have an issue in the build script for first time setups.
2024/05/15
Prioritized following discussion with @pdurbin. Initial sizing of 10 for investigation. Solving problem may require additional time.
bin/asadmin list-jvm-options:
-Ddataverse.pid.providers=fake
-Ddataverse.pid.fake.type=FAKE
-Ddataverse.pid.fake.label=Fake DOI Provider
-Ddataverse.pid.fake.authority=10.5072
-Ddataverse.pid.fake.shoulder=FK2/
Got this: {"status":"ERROR","message":"Setting :DoiProvider not found"}
with
http://localhost:8080/api/admin/settings/ :DoiProvider
Before the log error you sent above there should be a line with "CommandException, when attempting to update the dataset: " with some message. Do you see that? Can you report what it says?
Here is the log right after a restart.
server.log
It also includes a try of saving a new dataset
OK - some issue with finding the PidProvider which then leads to a null PID as in the first log you shared. Do you have -Ddataverse.pid.default-provider=fake set?
If not, that is probably it and we can look for why that isn't getting set by the installer. If so, I'm not sure what is happening. Doing a bin/asadmin set-log-levels edu.harvard.iq.dataverse.pidproviders.PidProviderFactoryBean=FINE and restarting should add info the the log about whether the fake provider is getting created properly or not.
I got these:
-Ddataverse.pid.providers=fake
-Ddataverse.pid.fake.type=FAKE
-Ddataverse.pid.fake.label=Fake DOI Provider
-Ddataverse.pid.fake.authority=10.5072
-Ddataverse.pid.fake.shoulder=FK2/
OK - so you need to run bin/asadmin create-jvm-options -Ddataverse.pid.default-provider=fake and restart payara. I'll look in the installlers and see if we're missing that line.
Did it and now I can save new dataset. Thanks!
-Ddataverse.pid.providers=fake
-Ddataverse.pid.fake.type=FAKE
-Ddataverse.pid.fake.label=Fake DOI Provider
-Ddataverse.pid.fake.authority=10.5072
-Ddataverse.pid.fake.shoulder=FK2/
-Ddataverse.pid.default-provider=fake
Cool. I do see that we're missing that command from the non-docker install. Not sure how it got missed, but I'll make a PR to add it and add a check to make sure a missing default gets flagged. Thanks for reporting this!
I thought the first line would be enough. Thanks for helping!
In a multipid setup that first line would be a list of several providers, so rather than guessing which is the default (first one?), we have an explicit default setting. Probably could just assume when there's only one though.
That explains it. Thanks for clarifying.
OK - so you need to run
bin/asadmin create-jvm-options -Ddataverse.pid.default-provider=fakeand restart payara. I'll look in the installlers and see if we're missing that line.
This works for me, too. Thanks a lot! I'll close this Issue.
I realize @faborg closed this issue (which is fine) and that @qqmyers has a pull request to fix it:
I went ahead and reproduced this on Dataverse 6.2 on Rocky 8.9 by running the installer manually (thank you, @donsizemore for GlobalDataverseCommunityConsortium/dataverse-ansible#350 ).
When you finish running the installer, you see something like this (I didn't bother to put in a proper hostname):
Command deploy completed with warnings.
Running post-deployment setup script (setup-all.sh)
You should now have a running Dataverse instance at
http://ip-172-31-8-57.ec2.internal:8080
Your Dataverse has been configured to use a Fake DOI Provider, registering (non-resolvable) DOI global identifiers in the
test name space "10.5072" with the "shoulder" "FK2"
You can reconfigure to use additional/alternative providers.
If you intend to use DOIs, you should contact DataCite (support\@datacite.org) or GDCC (see https://www.gdcc.io/about.html) and request a test account.
Once you receive the account information (name, password, authority, shoulder), add them to your configuration
as described in the Dataverse Guides (see https://guides.dataverse.org/en/latest/installation/config.html#persistent-identifiers-and-publishing-datasets),
and restart payara
If this is a production Dataverse and you are planning to register datasets as
"real", non-test DOIs or Handles, consult the "Persistent Identifiers and Publishing Datasets"
section of the Installataion guide, on how to configure your Dataverse with the proper registration
credentials.
IMPORTANT!
If this is a personal development installation, we recommend that you undeploy the currently-running copy
of the application, with the following asadmin command:
/usr/local/payara6/bin/asadmin undeploy dataverse-
before attempting to deploy from your development environment in NetBeans.
It's quite easy to reproduce the bug. Just try to create a dataset:
On the backend, yes the error is NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.pidproviders.PidProvider.generatePid(edu.harvard.iq.dataverse.DvObject)" because "pidProvider" is null
Stacktrace
[2024-05-16T16:14:40.577+0000] [Payara 6.2023.8] [WARNING] [AS-EJB-00056] [jakarta.enterprise.ejb.container] [tid: _ThreadID=90 _ThreadName=http-thread-pool::jk-connector(1)] [timeMillis: 1715876080577] [levelValue: 900] [[ A system exception occurred during an invocation on EJB EjbDataverseEngineInner, method: public java.lang.Object edu.harvard.iq.dataverse.EjbDataverseEngineInner.submit(edu.harvard.iq.dataverse.engine.command.Command,edu.harvard.iq.dataverse.engine.command.CommandContext) throws edu.harvard.iq.dataverse.engine.command.exception.CommandException]][2024-05-16T16:14:40.579+0000] [Payara 6.2023.8] [WARNING] [] [jakarta.enterprise.ejb.container] [tid: _ThreadID=90 _ThreadName=http-thread-pool::jk-connector(1)] [timeMillis: 1715876080579] [levelValue: 900] [[
jakarta.ejb.EJBException: Cannot invoke "edu.harvard.iq.dataverse.pidproviders.PidProvider.generatePid(edu.harvard.iq.dataverse.DvObject)" because "pidProvider" is null
at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723)
at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652)
at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482)
at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4601)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2134)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2104)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
at jdk.proxy74/jdk.proxy74.$Proxy383.submit(Unknown Source)
at edu.harvard.iq.dataverse.EJB31_Generated__EjbDataverseEngineInner__Intf____Bean.submit(Unknown Source)
at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:273)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4835)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:653)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at jdk.internal.reflect.GeneratedMethodAccessor293.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at jdk.internal.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4807)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4795)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
at jdk.proxy74/jdk.proxy74.$Proxy322.submit(Unknown Source)
at edu.harvard.iq.dataverse.EJB31_Generated__EjbDataverseEngine__Intf____Bean.submit(Unknown Source)
at edu.harvard.iq.dataverse.DatasetPage.save(DatasetPage.java:3890)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.expressly.util.ReflectionUtil.invokeMethod(ReflectionUtil.java:186)
at org.glassfish.expressly.parser.AstValue.invoke(AstValue.java:253)
at org.glassfish.expressly.MethodExpressionImpl.invoke(MethodExpressionImpl.java:248)
at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:70)
at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:74)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:62)
at jakarta.faces.component.UICommand.broadcast(UICommand.java:205)
at jakarta.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:858)
at jakarta.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1332)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:56)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:72)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:159)
at jakarta.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:691)
at jakarta.faces.webapp.FacesServlet.service(FacesServlet.java:449)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:83)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.pidproviders.PidProvider.generatePid(edu.harvard.iq.dataverse.DvObject)" because "pidProvider" is null
at edu.harvard.iq.dataverse.engine.command.impl.AbstractCreateDatasetCommand.execute(AbstractCreateDatasetCommand.java:89)
at edu.harvard.iq.dataverse.engine.command.impl.AbstractCreateDatasetCommand.execute(AbstractCreateDatasetCommand.java:30)
at edu.harvard.iq.dataverse.EjbDataverseEngineInner.submit(EjbDataverseEngineInner.java:36)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4835)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:653)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at jdk.internal.reflect.GeneratedMethodAccessor293.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at jdk.internal.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4807)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4795)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
... 92 more
]]
[2024-05-16T16:14:40.588+0000] [Payara 6.2023.8] [SEVERE] [] [edu.harvard.iq.dataverse.DatasetPage] [tid: _ThreadID=90 _ThreadName=http-thread-pool::jk-connector(1)] [timeMillis: 1715876080588] [levelValue: 1000] [[
CommandException, when attempting to update the dataset: Command [DatasetCreate dataset:null] failed: Cannot invoke "edu.harvard.iq.dataverse.pidproviders.PidProvider.generatePid(edu.harvard.iq.dataverse.DvObject)" because "pidProvider" is null
edu.harvard.iq.dataverse.engine.command.exception.CommandException: Command [DatasetCreate dataset:null] failed: Cannot invoke "edu.harvard.iq.dataverse.pidproviders.PidProvider.generatePid(edu.harvard.iq.dataverse.DvObject)" because "pidProvider" is null
at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:284)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4835)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:653)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at jdk.internal.reflect.GeneratedMethodAccessor293.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at jdk.internal.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4807)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4795)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
at jdk.proxy74/jdk.proxy74.$Proxy322.submit(Unknown Source)
at edu.harvard.iq.dataverse.EJB31_Generated__EjbDataverseEngine__Intf____Bean.submit(Unknown Source)
at edu.harvard.iq.dataverse.DatasetPage.save(DatasetPage.java:3890)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.expressly.util.ReflectionUtil.invokeMethod(ReflectionUtil.java:186)
at org.glassfish.expressly.parser.AstValue.invoke(AstValue.java:253)
at org.glassfish.expressly.MethodExpressionImpl.invoke(MethodExpressionImpl.java:248)
at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:70)
at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:74)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:62)
at jakarta.faces.component.UICommand.broadcast(UICommand.java:205)
at jakarta.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:858)
at jakarta.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1332)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:56)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:72)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:159)
at jakarta.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:691)
at jakarta.faces.webapp.FacesServlet.service(FacesServlet.java:449)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:83)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.pidproviders.PidProvider.generatePid(edu.harvard.iq.dataverse.DvObject)" because "pidProvider" is null
at edu.harvard.iq.dataverse.engine.command.impl.AbstractCreateDatasetCommand.execute(AbstractCreateDatasetCommand.java:89)
at edu.harvard.iq.dataverse.engine.command.impl.AbstractCreateDatasetCommand.execute(AbstractCreateDatasetCommand.java:30)
at edu.harvard.iq.dataverse.EjbDataverseEngineInner.submit(EjbDataverseEngineInner.java:36)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4835)
at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:653)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
at jdk.internal.reflect.GeneratedMethodAccessor293.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:603)
at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
at jdk.internal.reflect.GeneratedMethodAccessor281.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4807)
at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4795)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
at jdk.proxy74/jdk.proxy74.$Proxy383.submit(Unknown Source)
at edu.harvard.iq.dataverse.EJB31_Generated__EjbDataverseEngineInner__Intf____Bean.submit(Unknown Source)
at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:273)
... 88 more
]]
[2024-05-16T16:14:40.590+0000] [Payara 6.2023.8] [WARNING] [] [jakarta.enterprise.resource.webcontainer.faces.lifecycle] [tid: _ThreadID=90 _ThreadName=http-thread-pool::jk-connector(1)] [timeMillis: 1715876080590] [levelValue: 900] [[
#{DatasetPage.save}: /dataset.xhtml @990,44 action="#{DatasetPage.save}": java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
jakarta.faces.FacesException: #{DatasetPage.save}: /dataset.xhtml @990,44 action="#{DatasetPage.save}": java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:83)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:62)
at jakarta.faces.component.UICommand.broadcast(UICommand.java:205)
at jakarta.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:858)
at jakarta.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1332)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:56)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:72)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:159)
at jakarta.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:691)
at jakarta.faces.webapp.FacesServlet.service(FacesServlet.java:449)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:83)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: jakarta.el.ELException: /dataset.xhtml @990,44 action="#{DatasetPage.save}": java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:76)
at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:74)
... 44 more
Caused by: java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
at edu.harvard.iq.dataverse.DatasetPage.returnToDraftVersion(DatasetPage.java:4070)
at edu.harvard.iq.dataverse.DatasetPage.save(DatasetPage.java:3920)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.expressly.util.ReflectionUtil.invokeMethod(ReflectionUtil.java:186)
at org.glassfish.expressly.parser.AstValue.invoke(AstValue.java:253)
at org.glassfish.expressly.MethodExpressionImpl.invoke(MethodExpressionImpl.java:248)
at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:70)
... 45 more
]]
[2024-05-16T16:14:40.598+0000] [Payara 6.2023.8] [SEVERE] [] [jakarta.enterprise.resource.webcontainer.faces.context] [tid: _ThreadID=90 _ThreadName=http-thread-pool::jk-connector(1)] [timeMillis: 1715876080598] [levelValue: 1000] [[
java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
java.lang.NullPointerException: Cannot invoke "edu.harvard.iq.dataverse.GlobalId.asString()" because the return value of "edu.harvard.iq.dataverse.Dataset.getGlobalId()" is null
at edu.harvard.iq.dataverse.DatasetPage.returnToDraftVersion(DatasetPage.java:4070)
at edu.harvard.iq.dataverse.DatasetPage.save(DatasetPage.java:3920)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.expressly.util.ReflectionUtil.invokeMethod(ReflectionUtil.java:186)
at org.glassfish.expressly.parser.AstValue.invoke(AstValue.java:253)
at org.glassfish.expressly.MethodExpressionImpl.invoke(MethodExpressionImpl.java:248)
at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:70)
at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:74)
at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:62)
at jakarta.faces.component.UICommand.broadcast(UICommand.java:205)
at jakarta.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:858)
at jakarta.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1332)
at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:56)
at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:72)
at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:159)
at jakarta.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:691)
at jakarta.faces.webapp.FacesServlet.service(FacesServlet.java:449)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1554)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:83)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:166)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
]]
Again the PR that we hope will fix this is this one: