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IDR / ome-ngff-samples

A catalog of all public OME-NGFF representative samples derived from IDR data

Home Page:https://idr.github.io/ome-ngff-samples

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Create generic template from this repo

joshmoore opened this issue · comments

commented
  • load thumbnails as in https://github.com/will-moore/ome-ngff-validator rather than using IDR URLs
  • possibly load table data dynamically from the Zarr itself
  • create a new template repo under github.com/ome
  • strip out IDR specific columns like "View in IDR"
  • slightly unrelated:
    • create an action button to solidify copy/open/validate/...
commented

@joshmoore, @sbesson Thinking about all of these issues, and working with JavaScript, the current jekyll based deployment of this site is really a pain point. I can't deploy it locally (except with missing JavaScript/CSS!) and it's also very hard for others to review PRs etc.

I'm thinking we should just move to a modern JavaScript based repo (similar to ome-ngff-validator) which has a very nice dev setup (hot reloading etc) as well as deploy of PRs etc.

This could be forked as an IDR-free repo, e.g. at https://github.com/ome/ome-ngff-samples/

My biggest question is what JavaScript framework (if any) to go with!?

commented

Actually, I think using React make sense, then we can use Viv with <DeckGl> for thumbnails etc.

commented

Ahhh - zarr vv ngff issues again!
This would be what you see from https://ngff.openmicroscopy.org/data right?
So why go from ngff to zarr?
I guess the question is what we do when NGFF is OME-HDF and OME-Zarr?
Would we add hdf support to ome-ngff-catalog or would we start a new ome-hdf-catalog?
I don't know the answer to that, so I guess I could go with ome-zarr-catalog...