ICB-DCM / parPE

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

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gradient check CLI: allow specifying parameter index/ID

dweindl opened this issue · comments

For large problems, it would be convenient if specific parameters could be selected for gradient check via the command line interface.

  • Update gradient checker to accept a list of parameter IDs
  • Add CLI option / update arg parsing
  • Pass list of IDs through to gradient checker
  • Update GradientFunction to allow specifying parameter indices w.r.t. which gradient is to be computed
  • Set AMICI plist accordingly