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ICB-DCM / parPE

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

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Save parameter Ids in simulation results file

LeonardSchmiester opened this issue · comments

commented

At the moment, only parameter values are saved in the simulation h5 file but no parameter Ids.
Also, the parameter length is different from the optimization parameter vector (simulate file has more parameters than optimization results file)

commented

Also observable Ids and condition ids would be good, to have all infos in one file

commented

TODO

  • copy relevant input data to simulation file (esp. condition ids) (#120)
  • save problem parameter values
  • save problem parameter ids
  • save mapped parameters per simulation condition?
  • save observable ids
  • verify length of parameter vector
commented

With #259 these data should be there. Simulation result hdf5 files should now contain /inputData (same as optimization results), and along with the other simulation results, there is now also a parameters group with simulation parameters for the individual conditions and some additional datasets with IDs.