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IARCbioinfo / medical_genomics_course

Material for medical genomics course

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Improving TP2

nalcala opened this issue · comments

commented

Some clues to improve TP2 for next year

for the set up:

  • fix conda issues with INSA IT
  • provide alternative with clear instructions in case it does not work on local computers (rstudio cloud, jupyter, other)
  • provide more explanations (which command is for command line, R)

for the practical:

  • in general, shorten
  • reduce data wrangling at the beginning (already nice column names; possibly start from filtered data) to focus on MOFA usage
  • use fast convergence for MOFA?
commented

I hope that next year we will be able to use IARC IT infrastructure with Rstudio server, Jupyter notebook and a linux terminal.