HelikarLab / candis

:ribbon: A data mining suite for gene expression data.

Home Page:http://candis.readthedocs.io

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connection refused.

majumderS opened this issue · comments

Expected Behaviour

=>On hitting 127.0.0.1:5001 (any port prompted by server) we should be able to see the interface

Actual Behaviour

=> I am getting a psycopg2.OperationError connection refused error. Screenshot error. I have installed all the packages in requirements.txt.

Steps to Reproduce:

install candis (ubuntu)
python3

import candis
candis.main()

NOTE: Add a GIF/Screenshot if required.
2
1

Hi @majumderS, have you checked your postgresql server running?

HI @achillesrasquinha. Yes my postgresql db server was not running hence the issue. Thanks. May be for beginners, one pointer should be towards installation of postgresql as a dependency.

Did you take a look at the https://github.com/HelikarLab/candis/wiki? Would you mind updating the same? :)

Hi @achillesrasquinha Yes sure. I have added a small note in the dependency section of the Linux wiki in the forked repository which I forked from main HelikarLab rep. Please check the
https://github.com/majumderS/candis/wiki/A-Hitchhiker's-Guide-to-Installing-candis-on-Linux-OS#dependency-requirements-for-both-development-and-production
SInce its a wiki, I could not find any push to main branch option. Let me know.
Thanks.

You can change it here https://github.com/HelikarLab/candis/wiki directly. Thanks!

Directly as in I do not find any option to do so for github wiki in the github UI.

So I cloned the repository in my machine and tried to push the changes to a branch. I am getting permission denied error. I guess permission has not been provided for non-collaborators.

I tried the git pull-request but having a hard time setting up credentials.
git credential-store --file ~/git.store store
protocol=https
host=https://majumderS@github.com
username=xxxx
password=xxxx

Git is somehow not able to find the creds:

$git pull-request
Unable to find your GitHub credentials for github.com.
Make sure you have a line like this in your ~/.netrc file:
machine github.com login password , or use git store credentials

Let me know any ideas!

Thanks!

@achillesrasquinha I do still think that editing is restricted to collaborators only and hence I do not see any edit button.
This link here is a pointer.
https://help.github.com/en/enterprise/2.13/user/articles/changing-access-permissions-for-wikis

Also I tested with my wiki and a dummy account. It appeared only after I unchecked "restrict editing to collaborators only.
github2

I'm not sure by what you mean. Users are able to edit wikis. The link you point to has solely got do with GitHub Enterprise.

I'm closing this issue since it relates to PG server not running.