Harithaa Anandakumar (Harithaa-Anandakumar)

Harithaa-Anandakumar

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Harithaa Anandakumar's starred repositories

r-color-palettes

Comprehensive list of color palettes available in R β€οΈπŸ§‘πŸ’›πŸ’šπŸ’™πŸ’œ

ghibli

Studio Ghibli colour palettes

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biobakery

bioBakery tools for meta'omic profiling

workshop-scRNAseq

Single cell RNA sequencing analysis course

data-science-in-tidyverse

Data Science in the tidyverse, a two-day workshop @ rstudio:conf(2018)

corncob

Count Regression for Correlated Observations with the Beta-binomial

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gemelli

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

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CATALYST

Cytometry dATa anALYsis Tools

propr

[OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data

dsb

Normalize CITEseq Data

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scDataviz

scDataviz: single cell dataviz and downstream analyses

workshop_omics_integration

Workshop in omics integration and systems biology

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stamps2019

Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA

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crc_meta

Code and analysis results for the CRC shotgun meta-analysis

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RCAv2

R package for robust clustering of single cell RNA sequencing data

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ZIBR

Zero-Inflated Beta Random Effect model

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Introduction-to-Metagenomics-Summer-Workshop-2019

Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.

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GMHI_2020

Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.

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conda_on_the_cluster

A brief tutorial introducing learners to the Conda environment and package management system.

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AMON

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

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tidyMicro

tidyMicro GitHup Repository

stamps2018

STAMPS 2018 course

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UCE_phyluce_pipeline

UCE Bioinformatics Pipeline

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workshop-ngsintro

Workshop β€’ Intro to Bioinformatics using NGS data β€’ 5 days

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AgingMicrobiome

Aging Microbiome paper Wilmanski et. al.

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tmwr

Repository for working through Tidy Modeling with R

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