HNHalstead's repositories
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
Language:JavaNOASSERTION000
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:DockerfileGPL-3.0000
dockstore-tool-bamstats
following along tutorial
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Language:Python000
Language:wdlAGPL-3.0000
public_health_bioinformatics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.
Language:WDLGPL-3.0000
public_health_viral_genomics
Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially the SARS-CoV-2 virus
Language:WDLAGPL-3.0000
rnaseq
Fast RNAseq pipeline
Language:GroovyGPL-3.0000