GATB / dsk

k-mer counting software

Home Page:https://gatb.inria.fr/software/dsk/

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Support for Compressed datatset

taranglute opened this issue · comments

commented

Hi
I have quick query and it is related to support for compressed datatset.
Does DSK supports compressed datatset(gzip) and how to load one.

yes, it does, you can just give a gzipped file as if it was a fastq file (-in reads.fq.gz) or a list of gzipped fastq files (ls -1 *.fq.gq > list_files && ./dsk -in list_files)

commented

Thank you 👍