[bug?] the most commun kmer does not existe in file
mewu3 opened this issue · comments
Dear all,
I have a fasta file which i would like to count 13mer of all sequences, after counting i sort the kmer according to their abundance.
But the most commun kmer is not present in that fasta file.
maybe it's reverse complement is present
Yes, that's what I figured out at the end, I have switched to KMC3 cause they have the -b option to count k-mers with only forwards reads.
Thank you for your reply.