Giters

FirasGit / medicaldiffusion

Medical Diffusion: This repository contains the code to our paper Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Synthesis

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Format of BraTS data set

aminerLNC opened this issue · comments

commented

Hello,
After working through a few issues, I now have an error regarding the format of the brats dataset:
FileNotFoundError: No such file or no access: '/.......aTS2020_TrainingData/MICCAI_BraTS2020_TrainingData/BraTS20_Training_001/BraTS20_Training_001_flair.nii.gz'

The data is there, 33gb of training data. However, the files are not .gz They are simply in the format "BraTS20_Training_001_flair.nii"

This Brats data was downloaded from https://www.kaggle.com/datasets/awsaf49/brats2020-training-data

Is there a way to specify that the data is not in a .gz, but in the binary format provided by the repository?

commented

How do you solve this problem?