FRED-2 / OptiType

Precision HLA typing from next-generation sequencing data

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Docker container is not building

mwalzer opened this issue · comments

hdf5 resources are inavailable

@mwalzer could you try and build the container again. The container hosted at docker hub build correctly.

Yeah, now https://support.hdfgroup.org/ftp/HDF5/current18/bin/linux-centos7-x86_64-gcc485/hdf5-1.8.19-linux-centos7-x86_64-gcc485-shared.tar.gz is available again.
Still, I think to build from a docker image might be the more stable option.

Agreed. Will change the Dockerfile as soon as I find time.

running docker, the following error occurs:
File "/usr/local/bin/OptiType/OptiTypePipeline.py", line 11
SyntaxError: Non-ASCII character '\xc3' in file /usr/local/bin/OptiType/OptiTypePipeline.py on line 12, but no encoding declared; see http://python.org/dev/peps/pep-0263/ for details

It works when pulled from here