Giters

FRED-2 / OptiType

Precision HLA typing from next-generation sequencing data

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Memory issues with Razers3

alexanderwhatley opened this issue · comments

commented

I have a 28GB bam file, and I'm running into memory issues with Razers3 even when I allocate 32GB of RAM for this job. Do you have any recommendations on what to do? Thanks.

commented

Is this the intermediate bam file produced by OptiType, or you're trying to give OT a bam file (reads mapped against full reference genome) as input?

commented

I fixed this problem by breaking up the BAM file to only include chromosome 6 data.