EvolBioInf / epos

Estimate population sizes from site frequency spectra.

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epos

Author

Bernhard Haubold, haubold@evolbio.mpg.de

Description

The package epos contains two programs, epos itself and epos2ages. Epos estimates historic population sizes from site frequency data, and epos2ages converts these estimates to allele ages. The data file FoldSFS_YRI.txt is taken from Lapierre, Lambert, and Achaz (2017, Genetics, 206:439).

Dependencies

  • GNU scientific library
  • gnuplot
  • latex

Compilation

The sources are compiled using make The executables epos and epos2ages are now located in the directory build.

Documentation

The command make doc generates the manual doc/epos.pdf.

License

Gnu GLP

About

Estimate population sizes from site frequency spectra.


Languages

Language:C 89.6%Language:Shell 3.8%Language:Makefile 3.7%Language:Gnuplot 2.2%Language:Awk 0.5%Language:C++ 0.3%