EugOT

asitop

Perf monitoring CLI tool for Apple Silicon

quick-look-plugins

List of useful Quick Look plugins for developers

m-cli

 Swiss Army Knife for macOS

radian

A 21 century R console

httpgd

Asynchronous http server graphics device for R.

Sloth

Mac app that shows all open files, directories, sockets, pipes and devices in use by all running processes. Nice GUI for lsof.

custom-alfred-iterm-scripts

AppleScript for iTerm2 Alfred integration.

watchexec

Executes commands in response to file modifications

project-based-learning

Curated list of project-based tutorials

digital-gardeners

Resources, links, projects, and ideas for gardeners tending their digital notes on the public interwebs

recipes

Pipeable steps for feature engineering and data preprocessing to prepare for modeling

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

picasso

Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.

MCML

ggannotate

Interactively annotate ggplots

best-friends

Roam-Enhancement

Collection of JavaScript extensions for RoamResearch.

elegant-scipy

1st Edition of Elegant SciPy (O'Reilly Publishers)

create_cisTarget_databases

Create cisTarget databases

ctxcore

Core functions for pycisTarget and the SCENIC tool suite

pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

omnipath

Python client for the OmniPath web service

OmnipathR

R client for the OmniPath web service

seurat-wrappers

Community-provided extensions to Seurat

genetics-sumstat-harmoniser

Harmonise GWAS summary statistics against a reference VCF

constclust

Consistent Clusters for scRNA-seq

polyphenols

gnomad_methods

Hail helper functions for the gnomAD project and Translational Genomics Group

gnomad_qc