Ethan Holleman's repositories
leafly_scraper
Scripts for scraping and visualizing leafly.com strain data
pyCaliLegi
Automate pulling basic information about California legislation using Python and the Selenium package.
bpRNA
bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
DRIP-AGS-ENCODE
Quick snakemake pipeline to evaluate the proximity of AGS cell DRIP data to various encode features as called by chromHMM
functional-annotation
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
GGG-201D-proposal
Population genetics mock proposal
GLOE-DRIP
Reworking GLOE-seq DRIP comparison
GLOE-loops
Exploration of human GLOE-seq data and looking for possible connections to Rloop formation
GLOE-reps
Attempting to answer the question, how similar are biological replicates in GLOE-seq publication.
NBI_state_code_test
Anecdodal conformation of a potenial encoding discrepency in National Bridge Inventory data encoding for (mainly) csv encoded files.
pyBridgeInv
Work in progress python package for interacting with current (post 2019) National Bridge Inventory data
random_jupy_books
Assorted collection of one off jupyter notebooks
RNA-struct-loops
Probing nacent RNA secondary structure data in the context of R-loop formation
snake-backup
Snakemake and Rclone data backup system
snake-track
Work in progress Python repo to make uploading genomic data to Amazon S3 and UCSC genome browser easier
soup_monitor
Small program to monitor soup temperature and broth level using Raspberry Pi.
test_GLOE_pipe
Testing GLOE-seq pipeline