Confirming that separate conditions/treatments should be analyzed by separate pipelines
OrangeyO2 opened this issue · comments
Hello
Apologies if this question is redundant, but I just wanted to make sure I was correct.
Following up on these previous questions,
#67 #225 #258
separate conditions/treatments should have separate input json files, and be analyzed separately, am I correct?
Therefore, an input json file should only contain fastqs from the same condition/treatment, differing only in biological/technical replicates, and if there are 3 treatments (e.g. drug A, drug B, untreated), I should run the pipeline 3 times.
Thanks in advance for your help!
Yes correct
…On Mon, Nov 27, 2023, 10:23 PM OrangeyO2 ***@***.***> wrote:
Hello
Apologies if this question is redundant, but I just wanted to make sure I
was correct.
Following up on these previous questions,
#67 <#67> #225
<#225> #258
<#258>
*separate conditions/treatments should have separate input json files, and
be analyzed separately*, am I correct?
Therefore, an input json file should only contain fastqs from the same
condition/treatment, differing only in biological/technical replicates, and
if there are 3 treatments (e.g. drug A, drug B, untreated), I should run
the pipeline 3 times.
Thanks in advance for your help!
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Thank you!