EBI-Metagenomics / workflow-is-cwl

This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts

https://www.elixir-europe.org/

EBI-Metagenomics/workflow-is-cwl Issues

Trinity: Add test inputs and expected outputs
Closed 6 years ago4
cwlexec: InterProScan5 result file is not mapped to the output binding
Updated 6 years ago
Validating the complete assembly workflow
Closed 6 years ago2
Select, test and review Trimmomatic container
Updated 6 years ago3
Test and review Trinity container
Updated 6 years ago
Trimmomatic: Add test inputs and expected outputs
Updated 6 years ago1
Trimmomatic: Added Docker requirement and test the container
Updated 6 years ago1
BUSCO: Backslash char is not supported in FASTA header - Add FASTA header cleaning step
Closed 6 years ago1
Transrate: Improve Docker image
Closed 6 years ago8
Transrate: Command line tool version with local installation is not working using cwl-runner
Closed 6 years ago1
Transrate: Add test inputs and expected outputs
Updated 6 years ago1
InterProScan: Still don;t have a working version of a container
Closed 6 years ago1
BUSCO: Docker container doesn't write any results onto the local file system!
Closed 6 years ago3
FastQC: Create Docker container for version 0.11.7
Closed 6 years ago2
Trinity: Set up integration test
Updated 6 years ago