readUserInfo error

[Jason J. Williams, PhD]

I am using EGRET 3.0.2, R version 3.6.2, mergeReport yielded a report, but also an error and failed to create an eList object:

read in data--------------------------------------------------------------------

flow data

fileName <-"flow_formatted.csv"
filePath <-"./"

daily <-readUserDaily(fileName, filePath, separator = ",")
str(daily)

SSC sample data

samplefile <-"isco_formatted.csv"
samplepath <-"./"

conc <-readUserSample(samplefile, samplepath, separator = ",")
str(conc)

info file

infofile <-"info.csv"
infopath <-"./"

info <-readUserInfo(infofile, infopath, separator = ",")
str(info)

merge report-----------------------------------------------------------------

Johns_project <-mergeReport(info, daily, conc)

Discharge Record is 8702 days long, which is 24 years
First day of the discharge record is 1986-01-01 and last day is 2011-12-31
The water quality record has 1353 samples
The first sample is from 1986-03-04 and the last sample is from 2011-08-01
Discharge: Minimum, mean and maximum 0.309 4.22 82.7
Concentration: Minimum, mean and maximum 0.18 11 2100
Percentage of the sample values that are censored is 0 %Error in duplicated(eList$Daily$Date) : object 'eList' not found

egret_csvfiles.zip

[Laura DeCicco]

I think I fixed that a little bit ago, can you try:

remotes::install_github("USGS-R/EGRET")

and try again?

[Robert Hirsch]

I took a look at your csv files. Your flow data file MUST contain a discharge value for EVERY day, and no days can have multiple values. Just looking at the top of your CSV file I see this. date Qdaily 1/1/86 64.945 1/3/86 79.572 1/5/86 48.75 1/5/86 83.091 1/5/86 90.435 1/6/86 80.912 1/6/86 91.854 1/7/86 101.553 1/9/86 78.937 No value on 1/2/86, no value on 1/4/86, then 3 values on 1/5/86, etc. It has to be a complete daily record. Bob Hirsch From: jjwill2 <[e-mail]> Reply-To: USGS-R/EGRET <[e-mail]> Date: Friday, August 21, 2020 at 1:45 PM To: USGS-R/EGRET <[e-mail]> Cc: Subscribed <[e-mail]> Subject: [EXTERNAL] [USGS-R/EGRET] readUserInfo error (#281) This email has been received from outside of DOI - Use caution before clicking on links, opening attachments, or responding. I am using EGRET 3.0.2, R version 3.6.2, mergeReport yielded a report, but also an error and failed to create an eList object: read in data-------------------------------------------------------------------- flow data fileName <-"flow_formatted.csv" filePath <-"./" daily <-readUserDaily(fileName, filePath, separator = ",") str(daily) SSC sample data samplefile <-"isco_formatted.csv" samplepath <-"./" conc <-readUserSample(samplefile, samplepath, separator = ",") str(conc) info file infofile <-"info.csv" infopath <-"./" info <-readUserInfo(infofile, infopath, separator = ",") str(info) merge report----------------------------------------------------------------- Johns_project <-mergeReport(info, daily, conc) Discharge Record is 8702 days long, which is 24 years First day of the discharge record is 1986-01-01 and last day is 2011-12-31 The water quality record has 1353 samples The first sample is from 1986-03-04 and the last sample is from 2011-08-01 Discharge: Minimum, mean and maximum 0.309 4.22 82.7 Concentration: Minimum, mean and maximum 0.18 11 2100 Percentage of the sample values that are censored is 0 %Error in duplicated(eList$Daily$Date) : object 'eList' not found egret_csvfiles.zip<https://github.com/USGS-R/EGRET/files/5110375/egret_csvfiles.zip> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#281>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAI53UKS4CWX2SYBWNGOM4DSB2W5ZANCNFSM4QHQMJ6Q>.

[Jason J. Williams, PhD]

cleaning up the flow data solved the problem. Thank you.