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Clinical-Genomics / fusion-report

Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

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Two ETV6-ABL1 fusion with different breakpoints.

widfa11 opened this issue · comments

commented

Hi,
I recently got a reference RNA-fusion and run the fusion-report for arriba/fusioncatcher/star_fusion outputs. it looks great but I found that there is two ETV6-ABL1 fusion with different breakpoints. The outputs of arriba/fusioncatcher/star_fusion are correct (2 ETV6-ABL1 entries) but only 1 ETV6-ABL1 found in fusion-report. any comment or solution for this minor bug? thanks.

Seraseq-myeloid-fusion-rna
2020-12-21_15-52-47

commented

Hi @widfa11, you are correct. I only display the first found breakpoint in this case. I will make the change so you can see both breakpoints in the final report. I might have to update a little the UI as well. Thank you for the catch! 👍