Giters
Clinical-Genomics
/
cg
Glue between Clinical Genomics apps
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Stargazers:
6
Watchers:
11
Issues:
1029
Forks:
2
Clinical-Genomics/cg Issues
Replace `pkg_resources` which is deprecated
Updated
11 days ago
Comments count
1
Get delivery message for fluffy manual reruns retrieves wrong link to Statina
Updated
3 months ago
Bug in cg add externa-hk
Closed
3 months ago
Comments count
2
(Archiving) Jobs fail
Closed
3 months ago
Comments count
1
Error for encryption process
Closed
3 months ago
Comments count
8
Make the Tomte workflow orderable
Closed
3 months ago
Comments count
5
Delivery report for Tomte
Closed
3 months ago
Re-runs of cases with a different workflow
Closed
3 months ago
Comments count
5
Add run parameters to Housekeeper in post-processing flow cell
Closed
3 months ago
Non-existent run parameters file raises an error
Updated
25 days ago
Remove/replace hardcoded invoicing contact
Closed
25 days ago
Comments count
1
(Archiving) Validate DDN software after crash
Closed
4 months ago
Comments count
3
Make Taxprofiler orderable
Updated
3 months ago
Comments count
1
Script for marking archived files as archived
Closed
4 months ago
Comments count
3
Script for marking archived files as archived
Closed
4 months ago
Duplicate case sample filters base queries
Updated
4 months ago
bug: dry-run of cg downsample samples creates directory
Closed
2 months ago
Drop delivery table in cg?
Closed
3 months ago
Comments count
2
Define nextflow context
Closed
2 months ago
Comments count
1
clean `scout-finished-cases` has a potential issue with old `solved` cases
Updated
15 days ago
Comments count
9
Not possible to filter for cancelled samples in StatusDB
Updated
3 months ago
Comments count
10
Perform and record QC check in cg
Updated
4 months ago
Comments count
4
Relationships are not added when downsampling a case.
Closed
22 days ago
Comments count
4
Order validation rules
Updated
2 months ago
Comments count
3
Add PON information to delivery report
Closed
18 days ago
Extract authentication service
Updated
5 months ago
Data duplication linking samples to flow cells
Closed
4 months ago
Comments count
2
Inconsistent value type representation accros different tables
Updated
5 months ago
Attribute error in flow cell backup
Closed
5 months ago
Comments count
2
Add validation of well positions
Updated
5 months ago
Comments count
1
Remove order_id from status summary
Closed
5 months ago
Comments count
1
Review secrets management
Updated
5 months ago
Split the options endpoint
Updated
5 months ago
Comments count
1
Review authentication between services
Updated
5 months ago
Stage creating tickets in production
Updated
5 months ago
Same service account used for different services
Updated
5 months ago
Permissions for service accounts
Updated
5 months ago
Same service account used by cg-cli for stage and prod for trailblazer
Updated
5 months ago
Placing orders in stage fails due to LIMS
Closed
5 months ago
Comments count
1
Empty fastq files in delivery for microsalt cases
Updated
4 months ago
Comments count
4
Command to translate a v1 sample sheet to a v2
Closed
4 months ago
Comments count
1
Validate DNA upload has finished for mip-rna uploads
Closed
5 months ago
Comments count
1
Automatic email not sent for microsalt analyses
Closed
5 months ago
Comments count
1
(Streamline delivery) Populate OrderCase table
Closed
5 months ago
Comments count
8
Newly started microsalt analysis displayed as completed before finishing
Closed
5 months ago
Comments count
6
Move validation of sample sheets into pydantic model
Updated
a month ago
Comments count
2
CLI command cg add sample generates sample with missing information for Original Ticket which later prevents case upload
Closed
5 months ago
Comments count
2
Remove duplication from delivery report templates
Closed
3 months ago
Bundle filenames to be made into an enum class
Updated
5 months ago
Remove the APIRequest class
Updated
5 months ago
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