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Harmonise microSALT delivery options

Vince-janv opened this issue · comments

commented

Description

For files delivered to our delivery-server (Caesar) there are two options either ANALYSIS or FASTQ+ANALYSIS (or only FASTQ if no analysis is needed). For microSALT cases these are instead called FASTQ_QC and FASTQ_QC+ANALYSIS. The QC part is redundant and has little meaning.

microSALT orders should only have the options ANALYSIS and FASTQ+ANALYSIS to harmonise the options

Acceptance Criteria

  • Data delivery options for microSALT or not an exception to the rules for the other workflows

Notes

  • Removing QC should not change any logic (as we use case.data_delivery.contains("FASTQ"/"ANALYSIS")) which will still work
  • Some documentation in atlas might need to change

Implementation plan

  • The excel orderform for microSALT is updated with the general options
  • The FE options in the dropdown are removed
  • Remove the old options from cg.constants.constants.DataDelivery