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Clinical-Genomics / cg

Glue between Clinical Genomics apps

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Gens not available for some cases

ElekCMMS opened this issue · comments

commented

Hi,

For case 15126 and 15006-quattro I'm not able to access GENS in the structural variant page. Other users have tried with these cases as well without sucess and other cases works fine for me.

I get the following message when clicking on Gens:
Skärmklipp

Thank you!

commented

Thank you for reporting! The case in question has got a somewhat recent rerun (2024-05-08) of that 2023-05-05 version that gens tries to load. The gens db has not been updated, but the old gens files have been removed. Presumably we have an issue with how we handle these cases on cg upload. Most likely the issue exists for all reruns, but it's not always the case that the old files have been removed. Thank you for reporting! Do let us know if you are in any kind of hurry with this sample, and we can manually reload the gens files for you even before the general issue is fixed.

I'll forward this to the CG repo to check the procedure for gens re-uploads, but it also ties into Clinical-Genomics/gens#71.

commented

Hi! There is no hurry with these samples, thank you for the update!