Clinical-Genomics / cg

Glue between Clinical Genomics apps

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Empty folder creation when cloning cg repo

eliottBo opened this issue · comments

Description

  • When cloning cg repository in VSCode, the following folder appear in my local cg repo: /cg/home/proj/production/microbial/test/result/microsalt_case_clean. @ivadym noticed the same problem.

  • Screenshot 2024-05-20 at 14 06 01

Suggested solution

  • No relevant suggestion

This can be closed when

  • When cloning the cg repo this folder does not appear.

Blocked by

If there are any blocking issues/prs/things in this or other repos. Please link to them.

Exactly, we have some pytests in tests/cli/clean/test_microbial_clean.py (test_dry_run and test_clean_run) that are generating this folder structure outside the temporary directory path (tmp_path).