cdms thinks axes do not match
mzelinka opened this issue · comments
Describe the bug
I am trying to set the axes attributes of one variable to another. They have identical shapes, but CDMS is raising an error claiming that they are not the same shape:
On feedback2:
`anomclisccp.setAxisList(clisccp) `
---------------------------------------------------------------------------
CDMSError Traceback (most recent call last)
<ipython-input-4-730ada34a935> in <module>
----> 1 anomclisccp.setAxisList(clisccp)
~/workdir2/miniconda3/envs/cdat82/lib/python3.7/site-packages/cdms2/tvariable.py in setAxisList(self, axislist)
475 """Set the axes to axislist."""
476 for i in range(len(axislist)):
--> 477 self.setAxis(i, axislist[i])
478
479 def copyAxis(self, n, axis):
~/workdir2/miniconda3/envs/cdat82/lib/python3.7/site-packages/cdms2/tvariable.py in setAxis(self, n, axis, savegrid)
467 raise CDMSError(
468 "axis length %d does not match corresponding dimension %d" %
--> 469 (len(axis), axislen))
470 if not isinstance(axis, AbstractAxis):
471 raise CDMSError("copydimension, other not a slab.")
CDMSError: axis length 7 does not match corresponding dimension 480
This error is occurring despite the fact that:
`anomclisccp.shape`
Out[2]: (480, 7, 7, 90, 144)
And:
`clisccp.shape`
Out[3]: (480, 7, 7, 90, 144)
Environment Information
`conda info`
active environment : cdat82
active env location : /work/zelinka1/workdir2/miniconda3/envs/cdat82
shell level : 1
user config file : /work/zelinka1/.condarc
populated config files : /work/zelinka1/.condarc
conda version : 4.7.12
conda-build version : not installed
python version : 3.7.4.final.0
virtual packages :
base environment : /work/zelinka1/workdir2/miniconda3 (writable)
channel URLs : https://conda.anaconda.org/cdat/label/v82/linux-64
https://conda.anaconda.org/cdat/label/v82/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /work/zelinka1/workdir2/miniconda3/pkgs
/work/zelinka1/.conda/pkgs
envs directories : /work/zelinka1/workdir2/miniconda3/envs
/work/zelinka1/.conda/envs
platform : linux-64
user-agent : conda/4.7.12 requests/2.22.0 CPython/3.7.4 Linux/2.6.32-754.23.1.el6.x86_64 rhel/6.10 glibc/2.12
UID:GID : 25073:1026
netrc file : None
offline mode : False
`conda config --show-sources`
==> /work/zelinka1/.condarc <==
ssl_verify: False
channel_priority: strict
channels:
- cdat/label/v82
- conda-forge
- defaults
`conda list --show-channel-urls`
# packages in environment at /work/zelinka1/workdir2/miniconda3/envs/cdat82:
#
# Name Version Build Channel
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_openmp_mutex 4.5 0_gnu conda-forge
alabaster 0.7.12 py_0 conda-forge
astroid 2.3.3 py37_1 conda-forge
attrs 19.3.0 py_0 conda-forge
autopep8 1.5 py_0 conda-forge
babel 2.8.0 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
basemap 1.2.1 py37hd759880_1 conda-forge
bleach 3.1.0 py_0 conda-forge
bokeh 1.4.0 py37_0 conda-forge
bzip2 1.0.8 h516909a_2 conda-forge
ca-certificates 2019.11.28 hecc5488_0 conda-forge
cartopy 0.17.0 py37hd759880_1006 conda-forge
cdat 8.2 3 cdat/label/v82
cdat_info 8.2 py_7 conda-forge
cdms2 3.1.4 pypi_0 pypi
cdp 1.6.0 py_0 conda-forge
cdtime 3.1.2 py37h7eb8c7e_6 conda-forge
cdutil 8.2 py_2 cdat/label/v82
certifi 2019.11.28 py37_0 conda-forge
cffi 1.13.2 py37h8022711_0 conda-forge
chardet 3.0.4 py37_1003 conda-forge
cibots 0.3 py37_1001 conda-forge
click 7.0 py_0 conda-forge
cloudpickle 1.3.0 py_0 conda-forge
cryptography 2.8 py37h72c5cf5_1 conda-forge
curl 7.68.0 hf8cf82a_0 conda-forge
cycler 0.10.0 py_2 conda-forge
cytoolz 0.10.1 py37h516909a_0 conda-forge
dask 2.10.1 py_0 conda-forge
dask-core 2.10.1 py_0 conda-forge
dbus 1.13.6 he372182_0 conda-forge
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
distarray 2.12.2 py_1 conda-forge
distributed 2.10.0 py_0 conda-forge
docutils 0.16 py37_0 conda-forge
dv3d 8.2 py_0 cdat/label/v82
entrypoints 0.3 py37_1000 conda-forge
eofs 1.4.0 py_0 conda-forge
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keyring 21.1.0 py37_0 conda-forge
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libcdms 3.1.2 h7dcd879_5 conda-forge
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@mzelinka - could you send me the path to this dataset? And did you subset it in any dimension?
well that's embarrassing, I forgot to write it as anomclisccp.setAxisList(clisccp.getAxisList())