Buttonwood

ohmyzsh

🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool that makes it easy to keep up with the latest updates from the community.

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

go

The Open Source Data Science Masters

rickshaw

JavaScript toolkit for creating interactive real-time graphs

dplyr

dplyr: A grammar of data manipulation

ggpy

ggplot port for python

noc-examples-processing

Repository for example code from The Nature of Code book

data_hacks

Command line utilities for data analysis

prettyplotlib

Painlessly create beautiful matplotlib plots.

docopt.cpp

C++11 port of docopt

RHadoop

RHadoop

dataanalysis

The lecture slides for Coursera's Data Analysis class

LearningProcessing

A repo for examples from the book Learning Processing

rpackages

R package development - the Leek group way!

rMaps

Interactive Maps from R

intro-stats

Shiny apps for introductory statistics

ggbio

Grid and ggplot2 based visualization for biological data

arcdiagram

R package arcdiagram

AHRD

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

GBrowse

the Generic Genome Browser

hagfish

Hagfish - assess an assembly through creative use of coverage plots

ngsane

Analysis Framework for Biological Data from High Throughput Experiments

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

phylowood

Browser-based Interactive Phylogeographic Animations

gcookbook-translation

R Graphics Cookbook翻译项目文件

reciprocal_smallest_distance

Reciprocal Smallest Distance (RSD) is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.

rCharts_d3_horizon

3graphs

assemblage

Tools for working with second gen assemblies, fasta sequences, etc

LearningProcessing

A repo for examples from the book Learning Processing