Benjamin Langmead's repositories
bowtie-scaling
Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"
bioconda-recipes
Conda recipes for the bioconda channel.
docker-oss
Automatic compatibility tests, e.g. to learn which OS versions a binary can be run on
bowtie-site
Files behind the Bowtie website
hadoop-cluster
Documentation and scripts on the Langmed Lab Hadoop cluster at MARCC
jhu_int_prog
Publicly visible materials for intermediate programming
knitr-examples
a collection of knitr examples
qtip-experiments
Experiments for the qsim manuscript
recount.bwtool
Fast coverage matrices from recount data using bwtool
singularity-test
Simple tests to see how image URLs map onto branches, tags, hashes and commits in Singularity Hub
stepik-experiments
Example code for interacting with Stepik API
vagrant-docker
Containers with vagrant and libraries needed to run on EC2