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BackofenLab / IntaRNA

Efficient target prediction incorporating accessibility of interaction sites

Home Page:https://backofenlab.github.io/IntaRNA/

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outNoLP bug

martin-raden opened this issue · comments

commented 
 --> ./src/bin/IntaRNA -q GCAACGGUAACCUGAAACAGUUCACCAUCAAUGUCGGCCGCGACGGCACCAUCCAUCAGUUCAGCGCCAUCGAACAGGAUGACCAGCGCAGCAGCUAUCAGCUGAAAGCGCAGCAGAACGGCGCUGUCGAUGCAUCGAAAUUCACCUUUACCCCGCCGCAGGGCGUAACGGUUGACGAUCAACGCAAGUAAGAGGCGUGCAUGAGUAACAUGUCGCUCGAUUUUUCCGAGAACACGUUUCAACCUCUGGCCGCGCGUAUGCGGCCAGAAAAUUUAGCGCAGUACAUUGGUCAGCAGCAUC -t GCGUUCAGGGAAACCGUACGGUAAUCCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUUCUUAGCCAGCCGGGUGCUGGCUUUU

target
            36                      56
             |                      |
5'-GCG...AGCA     --       CAU-      CAGU...UUU-3'
             CGACA  UUGCUCA    UGCUUC
             |||||  +++++++    :||:||
             GCUGU  AAUGAGU    GCGGAG
3'-CUA...GCUC     AC       ACGU      AAUG...ACG-5'
             |                      |
           215                      192
query

interaction energy = -9.78 kcal/mol

 --> ./src/bin/IntaRNA -q GCAACGGUAACCUGAAACAGUUCACCAUCAAUGUCGGCCGCGACGGCACCAUCCAUCAGUUCAGCGCCAUCGAACAGGAUGACCAGCGCAGCAGCUAUCAGCUGAAAGCGCAGCAGAACGGCGCUGUCGAUGCAUCGAAAUUCACCUUUACCCCGCCGCAGGGCGUAACGGUUGACGAUCAACGCAAGUAAGAGGCGUGCAUGAGUAACAUGUCGCUCGAUUUUUCCGAGAACACGUUUCAACCUCUGGCCGCGCGUAUGCGGCCAGAAAAUUUAGCGCAGUACAUUGGUCAGCAGCAUC -t GCGUUCAGGGAAACCGUACGGUAAUCCUGAAAGCACGACAUUGCUCACAUUGCUUCCAGUAUUUCUUAGCCAGCCGGGUGCUGGCUUUU --outnolp

target
            37                     56
             |                     |
5'-GCG...GCAC    --       CAU-      CAGU...UUU-3'
             GACA  UUGCUCA    UGCUUC
             ||||  +++++++    :||:||
             CUGU  AAUGAGU    GCGGAG
3'-CUA...CUCG    AC       ACGU      AAUG...ACG-5'
             |                     |
           214                     192
query

interaction energy = -8.65 kcal/mol

one less which is not lonely!

commented

fixed in dev