Ariesissinging

SpectralEntropy

The similarity score for spectral comparison

seq2mlst

In silico multi-locus sequence typing (MLST) for bacterial genomes

imbalanced-learn

A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

ZIBR

Zero-Inflated Beta Random Effect model

longitudinal-notebooks

ANCOM-Code-Archive

Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.

ancomP

Analysis of Composition of Microbiomes

picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

metAMOS

A metagenomic and isolate assembly and analysis pipeline built with AMOS

MetabolomicsTools

DeviumWeb

Interactive multivariate data analysis in R implemented in shiny.

escher

Build, share, and embed visualizations of metabolic pathways.

mmvec

Neural networks for microbe-metabolite interaction analysis

bayesianSFPCA

manuscript analysis for Bayesian SFPCA

cudf

cuDF - GPU DataFrame Library

cuml

cuML - RAPIDS Machine Learning Library

nvidia-dli-2019

arxiv-crawler

crawling arXiv paper and organize as a database

scigen

An automatic paper generator

PythonSeries

redbiom

Sample search by metadata and features

corrr

Explore correlations in R

oce

R package for oceanographic processing

swirl_courses

:mortar_board: A collection of interactive courses for the swirl R package.